Omslagsbillede

Bioinformatics for Evolutionary Biologists A Problems Approach /

This self-contained textbook covers fundamental aspects of sequence analysis with special emphasis on evolutionary biology, including sequence alignment, exact matching, phylogeny reconstruction, and coalescent simulation. It addresses these topics through a series of over 800 computer problems, ran...

Fuld beskrivelse

Saved in:
Bibliografiske detaljer
Main Authors: Haubold, Bernhard (Author), Börsch-Haubold, Angelika (Author)
Institution som forfatter: SpringerLink (Online service)
Format: Electronisk eBog
Sprog:engelsk
Udgivet: Cham : Springer International Publishing : Imprint: Springer, 2023.
Udgivelse:2nd ed. 2023.
Fag:
Bioinformatics.
Evolution (Biology).
Evolutionary Biology.
Computational and Systems Biology.
Online adgang:https://doi.org/10.1007/978-3-031-20414-2
Tags: Tilføj Tag
Ingen Tags, Vær først til at tagge denne postø!
Indholdsfortegnelse:
  • Part I Problems
  • 1 The Unix Command Line
  • 1.1 Getting Started
  • 1.2 Files, Directories, and Programs.-1.3 Scripts
  • 2 Optimal Alignment
  • 2.1 Keeping Score
  • 2.2 Construction
  • 2.3 Application
  • 3 Exact Matching
  • 3.1 Keyword Trees
  • 3.2 Suffix Trees
  • 3.3 Suffix Arrays
  • 3.4 Text Compression
  • 4 Fast Alignment
  • 4.1 Global
  • 4.2 Local
  • 4.3 Glocal
  • 4.4 Assembly
  • 4.5 Multiple Sequences
  • 5 Evolution Between Species: Phylogeny
  • 5.1 Trees of Life
  • 5.2 Rooted Trees
  • 5.3 Unrooted Trees
  • 6 Evolution within Populations
  • 6.1 Descent from One or Two Parents
  • 6.2 The Coalescent
  • 7 Interrogating and Storing Data
  • 7.1 Statistics
  • 7.2 Relational Databases
  • Part II Answers.
  • 1 The Unix Command Line
  • 1.1 Getting Started
  • 1.2 Files, Directories, and Programs
  • 1.3 Scripts
  • 2 Optimal Alignment
  • 2.1 Keeping Score
  • 2.2 Construction
  • 2.3 Application
  • 3 Exact Matching
  • 3.1 Keyword Trees
  • 3.2 Suffix Trees
  • 3.3 Suffix Arrays
  • 3.4 Text Compression
  • 4 Fast Alignment
  • 4.1 Global
  • 4.2 Local
  • 4.3 Glocal
  • 4.4 Assembly
  • 4.5 Multiple Sequences
  • 5 Evolution Between Species: Phylogeny
  • 5.1 Trees of Life
  • 5.2 Rooted Trees
  • 5.3 Unrooted Trees
  • 6 Evolution within Populations
  • 6.1 Descent from One or Two Parents
  • 6.2 The Coalescent
  • 7 Interrogating and Storing Data
  • 7.1 Statistics
  • 7.2 Relational Databases
  • A. Unix Guide
  • B. Programs
  • B.1 Own
  • B.2 Biobox
  • B.3 Third-Party
  • References
  • Index.

Lignende værker